miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|229389807|gb|GO628592.1|GO628592 GGGGGGTATAAAAGCAATTCAACAGTGAATGTTGGACAACAGACCAAAGTCAGCTGTGAGAGAAGCTGCTGAAGACGGGA
TCCCTAAGGAGGAACAACCGTACCCATTTTTTCTAACCTTGGCTTCTGGTTCTTCTTCTTCTTGACTAACTCAACTTTTG
ACAGTGTCAGTCATGTCGGAGGAAGAAGAGTTGTCCTACAGCGAAGCCATTAAGAAGGCGAGCACTTCCATCTCTCGCTT
CCCTCTCATCCCAGTCAGAGGAATTCCTCTCATGTCCTTCATCGCCAACAACTGGGACTCCATCTGGGCTTTCCGTCCTG
ACCCCTCAGACCTCCTCATCGCCACATACCCCAAAGCAGGGACCACATGGACCCAGGAGATAGTTGACCTACTTCTTCAC
AACGGAGATGCTGAGGCCTGCAAACGAGCCCCGACACCCGTCCGCAGTCCTTTCCTAGAGATCTTCTCTCCACCACCCAT
TCCTTCAGGTCTTGATCATCTGAAAACCATGGATCCTCCAAGGATTATCAAGACACATCTTCCTTTTCAGTTGGTGCCTA
CAGGATTTTGGGAAAACAAGTGCAAGGTTATTTACGTGGCACGCAATGCCAAAGACAACCTGGTGAGCTACTTCTACTTT
GATTGTATGAATCTGACCCAACCTGAGCCGGGACCCTGGGAGGGCTACATCCCCAAGTTCATGAAAGGAGAGTTGTCATG
GGGCTCCTGGTACGACCATGTGAAAGGTTACTGGATGGAGAGAGAGAAGAAGAACATCCTTTACCTCTTCTACGAGGACA
TGAAAGAGAATCCTCGGCGTGAGGTAGAGCGCATCATGAAGTACCTGGACTTGTCCGTCTCTGATGAGGTCATCAGCAGG
ATTGTGGAGCTCACGTCCT




Most similar to sp|Q80VR3|ST1C1_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q93VG8|U326_ARATH UPF0326 protein At4g17486 OS=Arabidopsis
           thaliana GN=At4g17486 PE=2 SV=1
          Length = 224

 Score =  105 bits (261), Expect(2) = 2e-46
 Identities = 39/71 (54%), Positives = 56/71 (78%)
 Frame = +3

Query: 36  RISSNADSGSAPVYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFE 215
           R  S+ ++   PVYLNVYDLTP+N Y YWFG+G++HSG++ H +E+ +GAHEYP++G++E
Sbjct: 16  RDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYE 75

Query: 216 GEPKQCEGFRF 248
            EP+ C GF F
Sbjct: 76  VEPRNCPGFIF 86



 Score =  102 bits (255), Expect(2) = 2e-46
 Identities = 41/78 (52%), Positives = 58/78 (74%)
 Frame = +1

Query: 247 SILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCIKLTGNPIPSWVNRL 426
           S+L+G T +S ++ +S ME+L + Y G+ Y+LI KNCNHF   VC++LTG PIP W+NRL
Sbjct: 89  SVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRL 148

Query: 427 ARIGWICNCVLPATLSST 480
           AR+G  CNC+LP ++  T
Sbjct: 149 ARVGSFCNCLLPESIQLT 166


>sp|Q5PQ09|PPDE1_XENLA PPPDE peptidase domain-containing protein 1
           OS=Xenopus laevis GN=pppde1 PE=2 SV=1
          Length = 192

 Score = 75.1 bits (183), Expect(2) = 5e-27
 Identities = 32/61 (52%), Positives = 46/61 (75%)
 Frame = +1

Query: 247 SILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCIKLTGNPIPSWVNRL 426
           +I +G TD +E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +   L G  IP WVNRL
Sbjct: 71  AIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWVNRL 130

Query: 427 A 429
           A
Sbjct: 131 A 131



 Score = 67.8 bits (164), Expect(2) = 5e-27
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +3

Query: 69  PVYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           P+ LNVYD+  IN Y    G+GV+HSG+QV+G EFA+G H YP +G+FE  P
Sbjct: 5   PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISP 56


>sp|Q6DC39|PPDE1_DANRE PPPDE peptidase domain-containing protein 1
           OS=Danio rerio GN=pppde1 PE=2 SV=1
          Length = 196

 Score = 75.9 bits (185), Expect(2) = 2e-26
 Identities = 34/70 (48%), Positives = 51/70 (72%)
 Frame = +1

Query: 247 SILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCIKLTGNPIPSWVNRL 426
           +I++G TD +E +V+ ++EE+GK+Y+GNAY+L+ KNCNHF + +   L G  IP WVNRL
Sbjct: 71  AIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRL 130

Query: 427 ARIGWICNCV 456
           A   +  +CV
Sbjct: 131 A---YFSSCV 137



 Score = 65.1 bits (157), Expect(2) = 2e-26
 Identities = 28/52 (53%), Positives = 38/52 (73%)
 Frame = +3

Query: 69  PVYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           PV LNVYD+  IN +    G+GV+HSG++++G EFA+G H YP +GIFE  P
Sbjct: 5   PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITP 56


>sp|Q5R456|PPDE1_PONAB PPPDE peptidase domain-containing protein 1
           OS=Pongo abelii GN=PPPDE1 PE=2 SV=1
          Length = 194

 Score = 74.7 bits (182), Expect(2) = 1e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +  
Sbjct: 58  GNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSE 117

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP W+NRLA
Sbjct: 118 ILCGKEIPRWINRLA 132



 Score = 63.5 bits (153), Expect(2) = 1e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 57


>sp|A3QRX8|PPDE1_PIG PPPDE peptidase domain-containing protein 1
           OS=Sus scrofa GN=PPPDE1 PE=2 SV=1
          Length = 194

 Score = 74.7 bits (182), Expect(2) = 1e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +  
Sbjct: 58  GNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSE 117

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP W+NRLA
Sbjct: 118 ILCGKEIPRWINRLA 132



 Score = 63.5 bits (153), Expect(2) = 1e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 57


>sp|Q9D291|PPDE1_MOUSE PPPDE peptidase domain-containing protein 1
           OS=Mus musculus GN=Pppde1 PE=2 SV=1
          Length = 194

 Score = 74.7 bits (182), Expect(2) = 1e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +  
Sbjct: 58  GNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSE 117

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP W+NRLA
Sbjct: 118 ILCGKEIPRWINRLA 132



 Score = 63.5 bits (153), Expect(2) = 1e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 57


>sp|Q9BSY9|PPDE1_HUMAN PPPDE peptidase domain-containing protein 1
           OS=Homo sapiens GN=PPPDE1 PE=2 SV=1
          Length = 194

 Score = 74.7 bits (182), Expect(2) = 1e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +  
Sbjct: 58  GNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSE 117

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP W+NRLA
Sbjct: 118 ILCGKEIPRWINRLA 132



 Score = 63.5 bits (153), Expect(2) = 1e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 57


>sp|Q5XIT6|PPDE1_RAT PPPDE peptidase domain-containing protein 1
          Length = 194

 Score = 74.3 bits (181), Expect(2) = 2e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+Y+GNAY+L+ KNCNHF + +  
Sbjct: 58  GNAAELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSE 117

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP W+NRLA
Sbjct: 118 ILCGKEIPRWINRLA 132



 Score = 63.5 bits (153), Expect(2) = 2e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 7   VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 57


>sp|Q5ZIV7|PPDE1_CHICK PPPDE peptidase domain-containing protein 1
           OS=Gallus gallus GN=PPPDE1 PE=2 SV=1
          Length = 193

 Score = 73.9 bits (180), Expect(2) = 2e-25
 Identities = 33/75 (44%), Positives = 49/75 (65%)
 Frame = +1

Query: 205 GYLKENQSNVKDSGSILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCI 384
           G   E     K   ++++G TD  E +++ ++EELGK+++GNAY+L+ KNCNHF + +  
Sbjct: 57  GNASELGETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSE 116

Query: 385 KLTGNPIPSWVNRLA 429
            L G  IP WVNRLA
Sbjct: 117 ILCGKEIPRWVNRLA 131



 Score = 63.5 bits (153), Expect(2) = 2e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 72  VYLNVYDLTPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYPSTGIFEGEP 224
           V LNVYD+  +N Y    G+GV+HSG++V+G EFA+G H YP +GIFE  P
Sbjct: 6   VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISP 56


>sp|Q8X1T0|HAG1_SCHPO UPF0326 protein hag1 OS=Schizosaccharomyces
           pombe (strain ATCC 38366 / 972) GN=hag1 PE=1 SV=1
          Length = 201

 Score = 64.3 bits (155), Expect(2) = 2e-22
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 5/64 (7%)
 Frame = +3

Query: 72  VYLNVYDL---TPINGYAYWFGLGVYHSGLQVHGIEFAFGAHEYP-STGIFEGEPK-QCE 236
           VY+NVYDL   +P+N  A+  GLG+YH+GL + G E+AFGAHE P STG+F   P+   E
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62

Query: 237 GFRF 248
           G R+
Sbjct: 63  GCRW 66



 Score = 63.5 bits (153), Expect(2) = 2e-22
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 247 SILIGKTDLSEAEVKSLMEELGKDYRGNAYNLITKNCNHFCNHVCIKLTGNPIPSWVNRL 426
           SI +    L + +V  ++  L +++ G +Y+L+ +NCNHF N   I+LTG+PIPS++NR+
Sbjct: 69  SIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRI 128

Query: 427 ARIG 438
           +RIG
Sbjct: 129 SRIG 132


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q80VR3|ST1C1_MOUSE Sulfotransferase 1C1 OS=Mus musculus
           GN=Sult1c1 PE=1 SV=1
          Length = 304

 Score =  260 bits (664), Expect = 1e-68
 Identities = 118/215 (54%), Positives = 156/215 (72%)
 Frame = +2

Query: 254 VRGIPLMSFIANNWDSIWAFRPDPSDLLIATYPKAGTTWTQEIVDLLLHNGDAEACKRAP 433
           V GI +   ++ NWD IW F+  P DLLIATY KAGTTWTQEIVD++ ++GD + C+RA 
Sbjct: 23  VNGILMSKMMSENWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQNDGDVQKCQRAN 82

Query: 434 TPVRSPFLEIFSPPPIPSGLDHLKTMDPPRIIKTHLPFQLVPTGFWENKCKVIYVARNAK 613
           T  R PF+E   PPP+ SGLD    M  PR +KTHLP Q++P  FW+   K+IYVARNAK
Sbjct: 83  TYDRHPFIEWTLPPPLNSGLDLANKMPSPRTLKTHLPVQMLPPSFWKENSKIIYVARNAK 142

Query: 614 DNLVSYFYFDCMNLTQPEPGPWEGYIPKFMKGELSWGSWYDHVKGYWMEREKKNILYLFY 793
           D LVSY+YF  MN   P+PG    YI  F  G++ WGSWYDHVKG+W  ++K  ILYLFY
Sbjct: 143 DCLVSYYYFSRMNKMLPDPGTLGEYIETFKAGKVLWGSWYDHVKGWWDVKDKHRILYLFY 202

Query: 794 EDMKENPRREVERIMKYLDLSVSDEVISRIVELTS 898
           EDMKE+P+RE+++I+K+L+  +S+EV+++I+  TS
Sbjct: 203 EDMKEDPKREIKKIVKFLEKDISEEVLNKIIHHTS 237